Building

To build, run make. This will submit all queries, download their outputs, convert them (where necessary), and run all analysis tasks to generate the output tables/figures.

As Boa queries are submitted, they are marked public (unless specified not to) and details about the submitted Boa job are cached in jobs.json. This file contains keys that are the name of an output TXT file (without the data/txt/ prefix). The values are the job number and a sha256 hash of the source query (after running through the template engine). The hash is used to determine if the source query has changed and trigger re-submitted it. Otherwise, the downloader will simply grab the output from the job specified.

Cleanup

There are several make targets to clean up:

make clean cleans up some temporary files and analysis outputs
make clean-figures removes generated figures (.pdf and .png anywhere in figures/)
make clean-tables removes generated tables (.tex anywhere in tables/)
make clean-txt removes downloaded TXT files
make clean-csv removes generated CSV files
make clean-pq removes cached/intermediate Parquet files
make clean-zip removes generated ZIP files
make clean-all runs all the clean targets